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Add koma CLI app#769

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cncastillo merged 14 commits into
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codex/koma-cli-app
May 4, 2026
Merged

Add koma CLI app#769
cncastillo merged 14 commits into
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codex/koma-cli-app

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@cncastillo cncastillo commented May 3, 2026 •
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Summary

  • Add the koma Julia app for launching KomaUI and running simulations/reconstruction from the terminal.
  • Support input preloading by extension, batch outputs, repeated sim/recon params, CPU default execution, optional GPU backend loading, and --threads passthrough via Julia app flags.
  • Improve KomaUI startup ordering: create the Blink window earlier, preload inputs, attach filepickers before the success log, and keep the standalone app process alive while the UI is open.
  • Add CLI installation/usage docs plus README and UI docs pointers.
  • Bump the umbrella KomaMRI package version to 0.10.2.

Testing

  • Pkg.test()
  • koma -h
  • julia --startup-file=no --project=. -e 'using KomaMRI; @assert string(pkgversion(KomaMRI)) == "0.10.2"'

@cncastillo cncastillo added the documentation Improvements to docs., it also triggers doc preview label May 3, 2026
@cncastillo cncastillo changed the title Add koma CLI app Add koma CLI app May 3, 2026
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codecov Bot commented May 3, 2026 •
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Codecov Report

❌ Patch coverage is 93.49593% with 16 lines in your changes missing coverage. Please review.
✅ Project coverage is 88.68%. Comparing base (8c66f5c) to head (c8fc9fb).
⚠️ Report is 1 commits behind head on master.

Files with missing lines Patch % Lines
src/KomaCLI.jl 93.68% 13 Missing ⚠️
src/KomaUI.jl 92.59% 2 Missing ⚠️
src/KomaApp.jl 85.71% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #769      +/-   ##
==========================================
- Coverage   90.01%   88.68%   -1.34%     
==========================================
  Files          74       76       +2     
  Lines        5179     5389     +210     
==========================================
+ Hits         4662     4779     +117     
- Misses        517      610      +93
Flag Coverage Δ
base 86.48% <ø> (ø)
core 80.47% <ø> (-10.17%) ⬇️
files 95.26% <ø> (ø)
komamri 88.32% <93.49%> (+0.09%) ⬆️
plots 90.88% <ø> (ø)

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/KomaMRI.jl 100.00% <ø> (ø)
src/ui/ExportUIFunctions.jl 79.71% <100.00%> (-4.40%) ⬇️
src/KomaApp.jl 85.71% <85.71%> (ø)
src/KomaUI.jl 88.06% <92.59%> (-0.69%) ⬇️
src/KomaCLI.jl 93.68% <93.68%> (ø)

... and 8 files with indirect coverage changes

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@cncastillo cncastillo mentioned this pull request May 3, 2026
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github-actions Bot commented May 3, 2026

Preview available: https://juliahealth.github.io/KomaMRI.jl/previews/PR769/

@cncastillo cncastillo marked this pull request as ready for review May 4, 2026 00:11
@cncastillo cncastillo merged commit 0ab6bb9 into master May 4, 2026
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@cncastillo cncastillo deleted the codex/koma-cli-app branch May 4, 2026 01:05
github-actions Bot added a commit that referenced this pull request May 4, 2026
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Remove preview for PR #769 [skip ci]
32f9143
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